 | In press | Journal Article | Conservation Biology | Faber-Hammond, J., R. B. Phillips, L. K. Park. In press. The Sockeye Salmon Neo-Y Chromosome is a Fusion between the Coho Y Chromosome and the Long Arm of Rainbow Trout Omy2. Cytogenetic and genome research , 136 (1) : 69-74. |
 | In press | Journal Article | Fish Ecology | Thallman, H. L., E. A. Daly, R. D. Brodeur. In press. Two anomalously warm years in the northern California Current: impacts on early marine steelhead diet composition, morphology, and potential survival. Transactions of the American Fisheries Society. |
 | In press | Journal Article | Conservation Biology | Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources. |
 | In press | Journal Article | | Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216 |
 | In press | Journal Article | Conservation Biology | Williamson, K. S., B. P. May. In press. Mitochondrial DNA haplotype diversity in apparent XY-female Fall- and Spring-Run Chinook Salmon in California's Central Valley. Transactions of the American Fisheries Society. |
 | In press | Report | Fish Ecology | Torgersen, C. E., A. H. Fullerton, Z. Johnson, F. H. Mejia. In press. Stream temperature handbook: a primer on data and models. Northwest Climate Adaptation Science Center. Seattle (https://cig.uw.edu/our-work/decision-support/stream-temperature-handbook/) |
 | In press | Journal Article | Fish Ecology | Swieca, K., S. Sponaugle, C. Briseño-Avena, M. Schmid, R. D. Brodeur, R. Cowen. In press. Changing with the tides: fine-scale larval fish prey availability and predation pressure near a tidally-modulated river plume. Marine Ecology Progress Series. |
 | In press | Chapter or Section | | Schultz, I. R., J. L. Bolton, R. Stimmelmayr, G. M. Ylitalo. In press. Chapter 37: Contaminants. In George, J., J. Thewissen. (Eds.) The Bowhead Whale. Balaena mysticetus: Biology and Human Interactions. Academic Press (Elsevier). |
 | In press | Journal Article | | Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety. |
 | In press | Journal Article | Conservation Biology | Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management. |
 | In press | Journal Article | | Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere , 171 : 1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035 |
 | In press | Report | Fish Ecology | Katz, S. L., H. Beecher, M. Brady, J. Cook, K. K. Gates, J. Padowski, G. R. Pess, M. D. Scheuerell, J. Yoder. In press. Technical Supplement to Department of Ecology for Determining Net Ecological Benefit. Washington Department of Ecology, Olympia, Washington |
 | In press | Journal Article | | Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11 |
 | In press | Journal Article | | Leising, A., I. D. Schroeder, S. J. Bograd, E. P. Bjorkstedt, J. Field, K. Sakuma, J. Abell, R. R. Robertson, J. Tyburczy, W. T. Peterson, R. D. Brodeur, C. Barcelo, T. D. Auth, E. A. Daly, G. Campbell, J. Hildebrand, R. M. Suryan, A. J. Gladics, C. A. Horton, M. Kahru, M. Manzano-Sarabia, S. McClatchie, E. D. Weber, W. Watson, J. A. Santora, W. J. Sydeman, S. R. Melin, R. DeLong, J. L. Largier, S. Kim, F. P. Chavez, R. Golightly, S. R. Schneider, P. Warzybok, R. W. Bradley, J. Jahncke, J. L. Fisher, J. O. Peterson. In press. State of the California Current 2013-14: El Niño looming. California Cooperative Oceanic Fisheries Investigations Reports , 54 : 51-87. |
 | In press | Journal Article | Conservation Biology | Leong, K., S. Wongbusarakum, R. J. Ingram, A. Mawyer, M. R. Poe. In press. Improving Representation of Human Well-Being and Cultural Importance in the West Hawai¿i Integrated Ecosystem Assessment. Frontiers in Ecology and the Environment. |
 | In press | Journal Article | Conservation Biology | Berger, H.M., Siedlecki, S.A., Matassa, C.M., Alin, S.R., Kaplan, I.C., Hodgson, E.E., Pilcher, D.J., Norton, E.L. and Newton, J.A., 2021. Seasonality and life history complexity determine vulnerability of Dungeness crab to multiple climate stressors. AGU Advances, 2(4), p.e2021AV000456. |
 | In press | Journal Article | Conservation Biology | Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics , 3 (12) : 2281-2288. doi:10.1534/g3.113.008003 |
 | In press | Journal Article | | Dai, X., B. D. Bill, N. G. Adams, U. Tillmann, C. A. Sloan, D. Lu, V. L. Trainer. In press. The effect of temperature and salinity on growth rate and azaspiracid concentration in two strains of Azadinium poporum (Dinophyceae) from Puget Sound, Washington State. Harmful Algae. |
 | In press | Journal Article | Fish Ecology | Angert, A. L., L. G. Crozier, L. J. Rissler, S. E. Gilman, J. J. Tewksbury, A. J. Chunco. In press. Do species traits predict recent shifts at expanding range edges? Ecology Letters , (14) 677-689. |
 | In press | Journal Article | | Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology. |
 | In press | Journal Article | Conservation Biology | Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences. |
 | In press | Journal Article | Fish Ecology | Chamberlin, J. W., J. Hall, T. Zackey, F. E. Leonetti, M. Rustay, C. A. Rice. In press. Spatial and Temporal Variability in Chinook Salmon Abundance Reflects Opportunity to Support Life History Diversity in an Estuarine Landscape. Estuaries and Coasts. |
 | In press | Journal Article | Fish Ecology | Crozier, L. G., B. J. Burke, B. Chasco, D. L. Widener, R. W. Zabel. In press. Climate change threatens Chinook salmon throughout their life cycle. Communications Biology. |
 | In press | Journal Article | Fishery Resource Analysis and Monitoring | Langseth, B. J., S. Glover. In press. Distinguishing species-specific targeting practices within the main Hawaiian islands Deep 7 bottomfish fishery. Fisheries Research. |
 | In press | Journal Article | Conservation Biology | Brainard, R. E., C. Birkeland, C. M. Eakin, P. McElhany, M. Patterson, G. A. Piniak, M. Dunlap, M. Weijerman. In press. Incorporating Climate and Ocean Change into Extinction Risk Assessments for 82 Coral Species. Conservation Biology. |
 | In press | Journal Article | Fishery Resource Analysis and Monitoring | Gao, J., J. T. Thorson, C. Szuwalski, H. Wang. In press. Historical dynamics of the demersal fish community in the East and South China Seas. PLoS ONE. |
 | In press | Journal Article | Conservation Biology | Fraik, A. K., J. R. McMillan, M. Liermann, T. R. Bennett, M. L. McHenry, G. J. McKinney, G. A. Winans, A. H. Wells, J. L. Kelley, G. R. Pess, K. M. Nichols. In press. The impacts of dam construction and removal on the genetics of recovering steelhead (Oncorhynchus mykiss) populations across the Elwha River watershed. Gene. |
 | In press | Journal Article | | Ebel, J. D., D. A. Larsen, K. R. Conley, M. A. Middleton. In press. A fish out-of-basin: Increased stress physiology and reduced performance of Salmon River hatchery Chinook Salmon. North American Journal of Fisheries Management. |
 | In press | Journal Article | | Keogh, M. J., B. Taras, K. B. Beckmen, K. A. Burek-Huntington, G. M. Ylitalo, B. S. Fadely, L. Rea, K. W. Pitcher. In press. Organochlorine contaminant concentrations in blubber of young Steller sea lion (Eumetopias jubatus) are influenced by region, age, sex, and lipid stores. Science of the Total Environment. |
 | In press | Journal Article | Conservation Biology | Hess, J. E., R. D. Vetter, P. Moran. In press. A steep genetic cline in yellowtail rockfish, Sebastes flavidus, suggests regional isolation across the Cape Mendocino faunal break. Canadian Journal of Fisheries and Aquatic Sciences. |
 | 2026 | Book or book chapter | Molecular Genetics | , , , ,Karen Martien, ,Kim Parsons 2026. The role of kinship in shaping cetacean societies. |
 | 2025 | Journal Article | Conservation Biology Division | Liu, O.R., Kaplan, I.C., Hernvann, P.-Y., Fulton, E.A., Haltuch, M.A., Harvey, C.J., Marshall, K.N., Muhling, B., Norman, K., Pozo Buil, M., Rovellini, A. and Samhouri, J.F. (2025), Climate Change Influences via Species Distribution Shifts and Century-Scale Warming in an End-To-End California Current Ecosystem Model. Glob Change Biol, 31: e70021. https://doi.org/10.1111/gcb.70021 (https://doi.org/10.1111/gcb.70021) |
 | 2025 | Stock Assessment | Population Ecology | Johnson, K.F., A.M. Edwards, A.M. Berger, C.J. Grandin, and C.R. Wetzel. 2025. Status of the Pacific Hake (whiting) stock in U.S. and Canadian waters in 2025. Prepared by the Joint Technical Committee of the U.S. and Canada Pacific Hake/Whiting Agreement, National Marine Fisheries Service and Fisheries and Oceans Canada. 286 p. (https://www.fisheries.noaa.gov/s3/2025-02/Status-Pacific-Hake-whiting-US-and-Canadian-waters-2025.pdf) |
 | 2025 | Journal Article | Ocean Ecology | Mather, M. E., Taylor, R. B., Smith, J. M., & Boles, K. M. (2025). Integrated patterns of residence and movement create testable hypotheses about fish feeding migrations. Scientific Reports, 15(1), 5951. (https://doi.org/10.1038/s41598-024-79627-1) |
 | 2025 | Contract Report | Ecosystem Analysis Program | Jesse Lamb,Benjamin Sandford,Steven Smith,Ross Gleason,Amber Barenberg,Aimee Fullerton 2025. Monitoring the Migrations of Wild Snake River Spring/Summer Chinook Salmon Juveniles: Survival and Timing, 2024. |
 | 2025 | Journal Article | Ecosystem Analysis Program | Crozier, Lisa G., and Jared E. Siegel. 2025. ¿ From Threats to Solutions: A Literature Review of Climate Adaptation in Anadromous Salmon and Trout.¿ Ecosphere 16(1): e70054. https://doi.org/10.1002/ecs2.70054 (10.1002/ecs2.70054) |
 | 2025 | Journal Article | Estuarine and Ocean Ecology Program | Derville S, Fisher JL, Kaplan RL, Bernard KS, Phillips EM, Torres LG. A predictive krill distribution model for Euphausia pacifica and Thysanoessa spinifera using scaled acoustic backscatter in the Northern California Current. Progress in Oceanography. 2025 Feb 1;231:103388. (https://doi.org/10.1016/j.pocean.2024.103388) |
 | 2025 | Journal Article | Fishery Resource Analysis and Monitoring Division | Holland, D.S., S. Kasperski, J.K. Abbott. Contract and Sustain: The Impacts of Limited Entry and Catch Shares on West Coast and Alaska Fishing Fleets and Ports Over Four Decades 2025. In Press Canadian Journal of Fisheries and Aquatic Sciences https://doi.org/10.1139/cjfas-2024-0271 (https://doi.org/10.1139/cjfas-2024-0271) |
 | 2025 | Journal Article | Ecosystem Analysis Program | Crozier, L.G., Gomes, D.G.E. and Huff, D.D. (2025), Climate Change and Marine Food Webs: Navigating Structural Uncertainty Using Qualitative Network Analysis With Insights for Salmon Survival. Glob Change Biol, 31: e70143. https://doi.org/10.1111/gcb.70143 (https://doi.org/10.1111/gcb.70143) |
 | 2025 | Journal Article | Fisheries Engineering and Acoustic Technologies | Kaplan, R.L., Bernard, K.S., Derville, S., Fisher, J.L., Phillips, E.M., Daly, E.A., Warren, J.D., Torres, L.G. 2025. Krill swarm biomass, energetic density, and species composition drive humpback whale distribution in the Northern California Current. ICES Journal of Marine Science 82:1, fsaf005, https://doi.org/10.1093/icesjms/fsaf005 (https://doi.org/10.1093/icesjms/fsaf005) |
 | 2025 | Journal Article | Molecular Genetics | Brasseale, E., Adams, N., Allan, E. A., Jacobson, E. K., Kelly, R. P., Liu, O. R., et al. (2025). Marine eDNA production and loss mechanisms. Journal of Geophysical Research: Oceans, 130, e2024JC021643. (https://doi.org/10.1029/2024JC021643) |
 | 2025 | Journal Article | Watershed Program | Water Temperature, Prey Concentration and Salmonid Density Influence Daily Growth of Wild Juvenile Salmonids in Tributaries of the Upper Salmon River, Idaho (USA) (https://doi.org/10.1111/fwb.14380) |
 | 2025 | Journal Article | Conservation Biology Division | Feist, B.E., Griffin, R., Samhouri, J.F., Riekkola, L., Shelton, A.O., Chen, Y.A., Somers, K., Andrews, K., Liu, O.R. & Ise, J. (2025) Mapping the value of commercial fishing and potential costs of offshore wind energy on the U.S: West Coast: Towards an assessment of resource use tradeoffs. PLOS One, 20, e0315319. https://journals.plos.org/plosone/article/citation?id=10.1371/journal.pone.0315319 (https://journals.plos.org/plosone/article/citation?id=10.1371/journal.pone.0315319) |
 | 2025 | Letter to scientific journal | Forensics | Frankham, G.J., Ogden, R., Baker, B.W., Ewart, K.M., Johnson, R.N., Kuiper, I. et al. (2025) Standards in wildlife forensic science, with a focus on non-human DNA analysis. Animal Genetics, 56, e70005. Available from: https://doi.org/10.1111/age.70005 (https://doi.org/10.1111/age.70005) |
 | 2025 | Journal Article | Marine Microbes and Toxins Program | Charapata, P.; Bowers, E.K.; Hardison, D.R.; Kibler, S.; Anderson, D.M.; Fachon, E.; Lefebvre, K.A. Paralytic Shellfish Toxin Concentrations Measured in Alaskan Arctic Clams Using ELISA and HPLC Methods. Toxins 2025, 17, 60. https://doi.org/10.3390/toxins17020060 (https://doi.org/10.3390/toxins17020060) |
 | 2025 | Report | Nearshore Marine Ecology | Steel, E.A., Obiang Ndong, G., Adelola, T., Aggestam, F., Akwany, L., Bezerra, M., Casallas Ramirez, S., Colvin, C., Crane, S., Feist, B.E., and 16 others. 2025. Enabling consistent reporting and monitoring for freshwater (inland waters) restoration under Target 2 of the Kunming-Montreal Global Biodiversity Framework. Rome, FAO. https://doi.org/10.4060/cd5046en (10.4060/cd5046en) |
 | 2025 | Journal Article | Molecular Genetics | Xiong, Jilian, Parker MacCready, Elizabeth Brasseale, Elizabeth Andruszkiewicz Allan, Ana Ramón-Laca, Kim M. Parsons, Megan Shaffer, and Ryan P. Kelly. "Advective transport drives environmental DNA dispersal in an estuary." Environmental Science & Technology (2025). (https://doi.org/10.1021/acs.est.5c01286) |
 | 2025 | Journal Article | Aquaculture and Marine Fish and Shellfish Biology Program | Colt, J., G. Tchobanoglous, R.B. Johnson. 2025. Measurement of settling velocities of feeds and fecal solids in aquacultural applications, A Critical Review. Aquacultural Engineering, DOI: https://doi.org/10.1016/j.aquaeng.2025.102548 (https://doi.org/10.1016/j.aquaeng.2025.102548) |
 | 2025 | Journal Article | Fisheries Research Survey | Head, M.A., Billings, A.A., Tuttle, V.J. et al. Decade-scale spatio-temporal variability in maturity of Pacific hake, Merluccius productus, along the US West Coast. Environ Biol Fish (2025). https://doi.org/10.1007/s10641-025-01671-1 (https://doi.org/10.1007/s10641-025-01671-1) |
 | 2025 | Journal Article | Environmental and Fisheries Sciences Division | Li-Jung Kuo, Jacob Tietsort, Jennie L. Bolton, Jonelle B. Gates, Mariko Langness, Andrea Carey, Sandra O'Neill, Irvin R. Schultz (2025) Analysis of 6PPD-Q in finfish, shellfish, and marine mammal tissues. Chemosphere, Volume 379, 144418. (https://doi.org/10.1016/j.chemosphere.2025.144418) |